b.e30_alpha07c_cesm.B1850C_LTso.ne30_t232_wgx3.222

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Assessment

Difficulty
5/5
Estimated time
Over a week
Newbie friendliness
25/100
Issue type
Bug
Clarity
Mostly clear
Activity status
Stale
Domain
testing-qa

Research direction

Compare this experiment with #149 and the clone described in #173, focusing on the listed user_nl_mom, user_nl_cpl, user_nl_clm, user_nl_cam, and user_nl_cice settings. First verify the configuration and the MOM6 convection change referenced by PR #390. Done means determining whether reverting the ocean changes prevents the Lab Sea from freezing and reporting the run outcome.

Written by the indexing model from the issue text.

Description

Purpose:

Check if reverting all of the ocean changes back to the values used in 198 (#149) prevents the Lab Sea from freezing.


Description:
Clone of 217 #173, but with modified user_nl_mom (listed below). The only change that was not reverted was a bug fix in the convection scheme, described here.

user_nl_cpl:

wav_coupling_to_cice = .false.
histaux_l2x1yrg = .true.

user_nl_clm:

! These are not in an alpha tag yet, but would be ideal to start running with
paramfile = '/glade/campaign/cesm/cesmdata/cseg/inputdata/lnd/clm2/paramdata/ctsm60_params_cal115_c250813.nc'
glcmec_downscale_longwave = .false.

! This should be default in alpha07b, but aren't used in 198 which is reverted to clm5.3 data
!fsurdat= '/glade/campaign/cesm/cesmdata/inputdata/lnd/clm2/initdata_esmf/ctsm5.4/ctsm5.4_5.3.068_PPEcal115f09_118_pSASU.clm2.r.0161-01-01-00000.nc'

snow_thermal_cond_lake_method = 'Sturm1997'

use_init_interp = .true.
reseed_dead_plants = .true.

finidat= '/glade/campaign/cesm/cesmdata/inputdata/lnd/clm2/initdata_esmf/ctsm5.4/ctsm5.4_5.3.068_PPEcal115_116_pSASU.clm2.r.0161-01-01-00000.nc'

user_nl_cam:

mfilt               =       0,       5,     20,      40,      12,      120,      1,   1
nhtfrq              =       0,     -24,    -24,      -3,       0,       -2,      0,  -8760
ndens               =       2,       2,      2,       2,       2,        1,      2,   1
interpolate_output  =  .true.,  .true., .true.,  .true., .false.,   .true.,     .true.
interpolate_nlat    =     192,     192,    192,     192,      192,     192,      192
interpolate_nlon    =     288,     288,    288,     288,      288,     288,      288

empty_htapes = .true.

fincl1 = 'ACTNI', 'ACTNL', 'ACTREI', 'ACTREL', 'AODDUST', 'AODDUSTdn','AODVIS', 'AODVISdn','BURDENBC', 
'BURDENDUST', 'BURDENPOM', 'BURDENSEASALT',
'BURDENSO4', 'BURDENSOA', 'CAPE', 'CCN3', 'CDNUMC', 'CH4', 'CLDHGH', 'CLDICE', 'CLDLIQ', 'CLDLOW', 
'CLDMED', 'CLDTOT', 'CLOUD', 'CMFMC_DP',
'CT_H2O', 'DCQ', 'DQCORE', 'DTCOND', 'DTCORE', 'DTV', 'EVAPPREC', 'EVAPSNOW', 'FCTI', 'FCTL', 'FICE', 'FLDS', 'FLNS', 'FLNSC', 'FLNT', 'FLNTC', 'FLUT',
'FREQZM', 'FSDS', 'FSDSC', 'FSNS', 'FSNSC', 'FSNT', 'FSNTC', 'FSNTOA', 'ICEFRAC', 'LANDFRAC', 'LHFLX', 'LWCF', 'MPDICE', 'MPDLIQ', 'MPDQ', 'MPDT',
'OCNFRAC', 'OMEGA', 'OMEGA500', 'PBLH', 'PHIS', 'PINT', 'PMID', 'PRECC', 'PRECL', 'PRECSC', 'PRECSL', 'PRECT', 'PS', 'PSL', 'PTEQ', 'PTTEND', 'Q',
'QFLX', 'QRL', 'QRS', 'QTGW', 'RCMTEND_CLUBB', 'RELHUM', 'RVMTEND_CLUBB', 'SHFLX', 'SOLIN', 'SST', 
'STEND_CLUBB', 'SWCF',
'T', 'TAUX', 'TAUY', 'TFIX', 'TGCLDIWP', 'TGCLDLWP', 'TMQ', 'TREFHT', 'TS', 'TTGW', 'U', 'U10', 
'UBOT', 'UTGWORO', 'UTGW_TOTAL',
'V', 'VBOT', 'VTGWORO', 'VTGW_TOTAL', 'WPRTP_CLUBB', 'WPTHLP_CLUBB', 'Z3', 'ZMDQ', 'ZMDT', 'N2O',
 'CO2','CFC11','CFC12',
'AODVISdn','CCN3', 'CDNUMC', 'H2O', 'NUMICE', 'NUMLIQ','OMEGA500',
 'AQSO4_H2O2','AQSO4_O3', 'bc_a1', 'bc_a4', 'dst_a1', 'dst_a2', 'dst_a3', 'ncl_a1',
'ncl_a1', 'ncl_a2', 'ncl_a3', 'pom_a1', 'pom_a4', 'so4_a1', 'so4_a2', 'so4_a3', 'soa_a2' ,
'soa_a1', 'num_a1', 'num_a2', 'num_a3', 'num_a4',
'bc_a1SFWET', 'bc_a4SFWET', 'dst_a1SFWET', 'dst_a2SFWET', 'dst_a3SFWET', 'ncl_a1SFWET',
'ncl_a2SFWET', 'ncl_a3SFWET', 'pom_a1SFWET', 'pom_a4SFWET', 'so4_a1SFWET', 'so4_a2SFWET', 'so4_a3SFWET', 'soa_a1SFWET',
'soa_a2SFWET', 'bc_c1SFWET', 'bc_c4SFWET', 'dst_c1SFWET', 'dst_c2SFWET', 'dst_c3SFWET', 'ncl_c1SFWET', 'ncl_c2SFWET',
'ncl_c3SFWET', 'pom_c1SFWET', 'pom_c4SFWET', 'so4_c1SFWET', 'so4_c2SFWET', 'so4_c3SFWET', 'soa_c1SFWET', 'soa_c2SFWET',
'bc_a1DDF', 'bc_a4DDF', 'dst_a1DDF', 'dst_a2DDF', 'dst_a3DDF', 'ncl_a1DDF', 'ncl_a2DDF', 'ncl_a3DDF',
'pom_a1DDF', 'pom_a4DDF', 'so4_a1DDF', 'so4_a2DDF', 'so4_a3DDF', 'soa_a1DDF', 'soa_a2DDF',
'so4_a1_CLXF', 'so4_a2_CLXF', 'SFbc_a4', 'SFpom_a4', 'SFso4_a1', 'SFso4_a2',
'so4_a1_sfgaex1', 'so4_a2_sfgaex1', 'so4_a3_sfgaex1', 'soa_a1_sfgaex1', 'soa_a2_sfgaex1',
'SFdst_a1','SFdst_a2', 'SFdst_a3', 'SFncl_a1', 'SFncl_a2', 'SFncl_a3',
'num_a2_sfnnuc1', 'SFSO2', 'OCN_FLUX_DMS', 'SAD_SULFC', 'SAD_TROP', 'SAD_AERO',
'AODVISstdn', 'REFF_AERO', 'so4_a1', 'so4_a2', 'SAD_AERO', 'PS', 'TROP_P', 'FSNTOAC',
'CME', 'CMEIOUT'

fincl3 = 'PRECT', 'PRECC', 'FLUT', 'U850', 'U200', 'V850', 'V200', 'OMEGA500', 'TS', 'SST', 'PSL', 'Z500'

fincl4 =  'PRECC','PRECL'

fincl5 = 'Uzm','Vzm','Wzm','THzm', 'VTHzm','WTHzm','UVzm','UWzm'
phys_grid_ctem_nfreq=-6
phys_grid_ctem_zm_nbas=120
phys_grid_ctem_za_nlat=90


solar_irrad_data_file= '/glade/campaign/cesm/development/cross-wg/inputdata/SolarForcingCMIP7piControl_c20250103.nc'

micro_mg_dcs= 600.D-6
cldfrc_dp1 =  0.05
clubb_c8 = 4.6

bnd_topo = "/glade/campaign/cgd/amp/pel/topo/cesm3/ne30pg3_gmted2010_modis_bedmachine_nc3000_Laplace0100_noleak_greendlndantarcsgh30fac2.50_20250708.nc"

ext_frc_specifier = 'bc_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/bc_a4-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_bc_a4-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'SO2 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/SO2-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'so4_a1 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/so4_a1_ene_vertical-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a1 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_so4_a1_ene_vertical-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a1 -> /glade/campaign/cesm/cesmdata/inputdata/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_num_a1_so4_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
         'num_a2 -> /glade/campaign/cesm/cesmdata/inputdata/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_num_a2_so4_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
         'so4_a1 -> /glade/campaign/cesm/cesmdata/inputdata/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_so4_a1_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
         'so4_a2 -> /glade/campaign/cesm/cesmdata/inputdata/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_so4_a2_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',
         'SO2 -> /glade/campaign/cesm/cesmdata/inputdata/atm/cam/chem/emis/historical_ne30pg3/emissions-cmip6_SO2_contvolcano_vertical_850-5000_ne30pg3_c20200125.nc',

srf_emis_specifier = 'bc_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/bc_a4-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'bc_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/bc_a4_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'pom_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/pom_a4-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'pom_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/pom_a4_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'num_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_bc_a4-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/num_bc_a4_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'num_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_pom_a4-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a4 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/num_pom_a4_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'num_a1-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_so4_a1_ag-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a1-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_so4_a1_ship_slv-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'num_a2-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/num_so4_a2_res_trs-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'so4_a1-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/so4_a1_ag_ship_slv-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'so4_a2-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/so4_a2_res_trs-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'so4_a1-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/SO4_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'num_a1-> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/num_SO4_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SO2 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/SO2-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'SO2 -> /glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/SO2_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 0.5954D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/ISOP_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 2.5592D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/BENZENE_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 2.5592D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/BENZENE-VOC-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18-supplemental_gn_175001-202312.nc',
         'SOAE -> 8.5371D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/IVOC_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 8.5371D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/IVOC-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'SOAE -> 16.650D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/SVOC_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 16.650D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/SVOC-em-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18_gn_175001-202312.nc',
         'SOAE -> 8.2367D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/TOLUENE_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 8.2367D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/TOLUENE-VOC-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18-supplemental_gn_175001-202312.nc',
         'SOAE -> 6.5013D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/XYLENES_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc',
         'SOAE -> 6.5013D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/CEDS-CMIP-2025-04-18/XYLENES-VOC-anthro_input4MIPs_emissions_CMIP_CEDS-CMIP-2025-04-18-supplemental_gn_175001-202312.nc',
         'SOAE -> 5.1004D0*/glade/campaign/acom/MUSICA/emis/cmip7/ne30/DRES-CMIP-BB4CMIP7-2-0_smoothed/MTERP_smoothed_input4MIPs_emissions_CMIP_DRES-CMIP-BB4CMIP7-2-0_gn_175001-202112.nc'

clubb_gamma_coef        =  0.30000001

user_nl_cice:

ice_ic = "/glade/derecho/scratch/gmarques/b.e30_alpha07c_cesm.B1850C_LTso.ne30_t232_wgx3.220/run/INPUT/g.e30_a07c_cesm.GJRAv4.TL319_t232_wgx3_hycom1_N75.2025.130.cice.r.0009-01-01-00000.nc"

user_nl_mom:

HREF_FOR_MLD = 10.0
INPUTDIR = "INPUT"

MLE%
BODNER_MSTAR = 1.0
BODNER_NSTAR = 1.0
WAVE_ENHANCED_USTAR = False
CR = 0.01
CR_FILE = "mle-cr-mask_20250627.nc"
%MLE

SMAGORINSKY_KH = True
SMAG_LAP_CONST = 0.15
AH = 1.0e+12
LEITH_BI_CONST = 90.0
LEITHY_CK = 0.0
DO_SKEB = True
SKEB_NPASS = 8
SKEB_USE_GM = True
SKEB_GM_COEF = 0.75
MEKE_GMCOEFF = 0.25
SKEB_USE_FRICT = False
SKEB_FRICT_COEF = 0.0
ALE_COORDINATE_CONFIG = "HYBRID:hybrid_75layer_zstar2.50m-2025-04-04.nc,sigma2,dz"
MAX_LAYER_THICKNESS_CONFIG = "FILE:dz_max.nc,dz"
MAXIMUM_INT_DEPTH_CONFIG = "FILE:lev.nc,Z"

THICKNESS_CONFIG = thickness_file
VELOCITY_CONFIG = file
TS_CONFIG = file

INIT_LAYERS_FROM_Z_FILE = False

THICKNESS_FILE = "g.e30_a07c_cesm.GJRAv4.TL319_t232_wgx3_hycom1_N75.2025.130.mom6.r.0009-01-01-00000.nc"
TS_FILE = "g.e30_a07c_cesm.GJRAv4.TL319_t232_wgx3_hycom1_N75.2025.130.mom6.r.0009-01-01-00000.nc"
VELOCITY_FILE = "g.e30_a07c_cesm.GJRAv4.TL319_t232_wgx3_hycom1_N75.2025.130.mom6.r.0009-01-01-00000.nc"

TEMP_IC_VAR = "Temp"
SALT_IC_VAR = "Salt"

RESTART_CHECKSUMS_REQUIRED = FALSE

! GMM: reverting changes that might be leading to Lab Sea freeze

ENABLE_BUGS_BY_DEFAULT = False
DEPTH_SCALED_KHTH_H0 = 250.0
TFREEZE_S_IS_PRACS = False
TFREEZE_T_IS_POTT = False
REMAPPING_SCHEME = "PPM_CW"
VELOCITY_REMAPPING_SCHEME = "PPM_CW"
USE_STANLEY_GM = True
RHO_PGF_REF_BUG = True
MASS_WEIGHT_IN_PRESSURE_GRADIENT_TOP = False
BACKSCATTER_UNDERBOUND = True
ANSWER_DATE = 20240101
WAVE_INTERFACE_ANSWER_DATE = 20221231
EQN_OF_STATE = "WRIGHT"
REGRIDDING_ANSWER_DATE = 20181231

! There are the key changes that might have contributed to the freeze
CEMP_NL = 2.0
KPP%
KPP_CVt2 = 1.0
ENHANCE_DIFFUSION = True
%KPP

CVMix_CONVECTION%
BV_SQR_CONV = 0.0
%CVMix_CONVECTION

! Sensitivity to interior mixing settings and background @ Banda Sea
BCKGRND_VDC_BAN = 1.0E-04
NU_ZERO = 0.005
RI_ZERO = 0.8

Case directory:


Sandbox:

  • Locally (if still available): /glade/work/gmarques/cesm.sandboxes/cesm3_0_alpha07c_cesm3

Diagnostics:


Output:

  • Raw output on derecho (if still available): /glade/derecho/scratch/gmarques/archive/b.e30_alpha07c_cesm.B1850C_LTso.ne30_t232_wgx3.222/
  • CAM Climos: /glade/campaign/cgd/amp/amwg/climo/b.e30_alpha07c_cesm.B1850C_LTso.ne30_t232_wgx3.222

Contacts:
@cecilehannay @dlawrenncar @adamrher @PeterHjortLauritzen @JulioTBacmeister @swrneale @slevis-lmwg @wwieder @olyson @gustavo-marques @iangrooms @fobryan3 @klindsay28 @dabail10 @duvivier @tilmes @mbramberger


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