Handle when `allow-scripts auto` needs to be run after `yarn install`

Sometimes when dependencies are updated and `yarn install` is run, a message appears from `allow-scripts` saying that `allow-scripts auto` needs to be run. The tool should either detect this and ask the user what to do or just run this command automatically.

Start by tracing how this repository invokes or handles `yarn install`, then inspect how output from `allow-scripts` is surfaced. Decide whether the tool should prompt for `allow-scripts auto` or run it automatically, and verify that dependency updates no longer leave this state unresolved.

Written by the indexing model from the issue text.