MetaCell / MetaCell/virtual-fly-brain

Ribbons for neuron classes in terminfo query summaries

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#29 5 comments 0 reactions 0 assignees View on GitHub
Dominant language
JavaScript
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2
Forks
1
PR merge metrics
No merged PRs in 30d

Description

Example ribbon from FlyBase - https://flybase.org/reports/FBgn0050446

Idea is ribbon of squares with heat map colours and text for each square.

For now:
Badges are currently mostly neurotransmitters, but can use as an example.
- example query: neurons connected to "PAM01 455159380"
- just do inputs for now - will calculate using json labels.

Later goals if possible:
- issue with using badges is they're biased towards NTs, which probably isn't the most important for most people.
- Could use the list of superclasses/classes from FlyWire for FAFB. Other templates would need their own list.
- Could also make contextual? If all neurons returned are in the same superclass, which seems likely, it may be better to then return the classes.
- Superclasses - 9
- Classes - ~25

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by locating the existing badge rendering and query-summary code, then reproduce the example query for neurons connected to "PAM01 455159380". Review how JSON labels are currently used for inputs and compare the FlyBase example; done means a ribbon of colored, labeled squares appears for the initial input case.

Written by the indexing model from the issue text.

Assessment

Tech stack
javascript
Domain
data-visualization, frontend
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
28/100

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