Bring SetupPaths and FullPaths together

Migrated Jira Issue CDDSO-211
Jira creation date 18/10/2022 16:02
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The ``SetupPaths`` class is a child of the ``FullPaths`` class. The reason is that the ``FullPaths`` calls depends on an ``Arguments`` object what is not always available.

This could be a useful refactoring of the ``FullPaths`` class itself and move the ``FullPaths`` class out of the deprecated package
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Start by reading the SetupPaths and FullPaths classes and tracing where Arguments is required or unavailable. Review the deprecated package placement and decide how the classes should be unified. Done means the refactoring removes the stated dependency problem and moves FullPaths out of the deprecated package without breaking its callers.

Written by the indexing model from the issue text.