Merck / Merck/BioPhi

OASis local set prevalence threshold

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Dominant language
Python
Stars
265
Forks
65
PR merge metrics
No merged PRs in 30d

Description

Hi, I am trying to run the oasis tool locally. I want to use the strict threshold, but cant find any information on how to select a threshold when running it locally.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the OASis local command entry point and any existing documentation for threshold selection. Check how the strict threshold is represented in the local invocation, then document the required option and verify that the documented command selects it successfully.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli, documentation
Issue type
Documentation
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
57/100

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