OASis prevalence threshold for custom
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- Dominant language
- Python
- Stars
- 265
- Forks
- 65
- PR merge metrics
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Description
Currently, OASis prevalence threshold settings:
loose (≥1% subjects)
relaxed (≥10% subjects)
medium (≥50% subjects)
strict (≥90% subjects)
custom
When I set a 5% as custom threshold, the threshold field in the output xlsx file is strict, rather than loose.
I tried other values, rather than 1,10,50,90, all threshold field in the output xlsx file is strict.
Could someone explain this for me?
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the issue with a custom OASis prevalence threshold such as 5% and inspect how the threshold is represented in the output XLSX file. Trace the threshold handling and output generation to determine why nonstandard values are labeled strict; done means custom values are reported correctly.
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Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100