Merck / Merck/BioPhi

how to set the OASis prevalence threshold when using biophi on command line?

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Dominant language
Python
Stars
265
Forks
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Description

how to set the OASis prevalence threshold when using biophi on command line? I don't the option in biophi sapiens command. Thanks,

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the biophi sapiens command and inspect its available options and the OASis prevalence-threshold handling. Determine whether the threshold needs to be exposed as a command-line option or documented, then verify the behavior through the command's help output and a representative invocation.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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