Issues running demo code
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Description
Prerequisites
- [ x] Put an X between the brackets on this line if you have done all of the following:
- Checked the online documentation: https://mimic.physionet.org/about/mimic/
- Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=
- Checked online common solutions: https://opendata.stackexchange.com/questions/tagged/mimic-iii
Description
I am currently using a Mac and trying to set up the database using Postgresql as instructed in the tutorial on the MIMIC III database website. I have loaded the demo data into a file /buildmimic/postgres/data/ and have been trying to run make from /buildmimic/postgres/. However, every time I try to run make, it tells me "Unable to find /Data/ADMISSIONS.csv - exiting before build.
make: *** [mimic-check] Error 1"
I have checked multiple times and the file is certainly there. Am I placing the data in the wrong place? I have checked online for any resources regarding this but I have not been able to solve this issue. Can you please help me. Thank you.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the MIMIC-III database tutorial and the buildmimic/postgres/ setup referenced in the report. Check how the make target locates /Data/ADMISSIONS.csv and compare that with the reported demo-data location. Done means the documented demo database build completes without the missing-file error.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- postgresql
- Domain
- databases
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100