MIT-LCP / MIT-LCP/mimic-code

Issues running demo code

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mimic-iii
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Description

Prerequisites
Description

I am currently using a Mac and trying to set up the database using Postgresql as instructed in the tutorial on the MIMIC III database website. I have loaded the demo data into a file /buildmimic/postgres/data/ and have been trying to run make from /buildmimic/postgres/. However, every time I try to run make, it tells me "Unable to find /Data/ADMISSIONS.csv - exiting before build.
make: *** [mimic-check] Error 1"

I have checked multiple times and the file is certainly there. Am I placing the data in the wrong place? I have checked online for any resources regarding this but I have not been able to solve this issue. Can you please help me. Thank you.

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the MIMIC-III database tutorial and the buildmimic/postgres/ setup referenced in the report. Check how the make target locates /Data/ADMISSIONS.csv and compare that with the reported demo-data location. Done means the documented demo database build completes without the missing-file error.

Written by the indexing model from the issue text.

Assessment

Tech stack
postgresql
Domain
databases
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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