MIT-LCP / MIT-LCP/mimic-code

MIMIC-IV-ECG download index.html and slow

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Description

I would really appreciate any tips to download the 90.4 GB ECG waveforms!

What I've been doing:

  • Using wget -r -N -c -np https://physionet.org/files/mimic-iv-ecg/1.0/ since this morning, which only seems to download index.html so far, except for the main .csv files.
  • I've checked Google BigQuery, but I cannot see any waveform files except for the three tables (please see below):
Image - Downloading the 33.8 GB zipped file is very slow too. - I found a Google Storage bucket (https://console.cloud.google.com/storage/browser/mimic-iv-ecg) but there is nowhere to apply for the permission (see below). Image

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the reported wget command and the MIMIC-IV-ECG PhysioNet URL, then compare the described BigQuery tables and Google Storage bucket. The issue does not identify a repository file or test, and its desired resolution and completion criteria remain unspecified.

Written by the indexing model from the issue text.

Assessment

Tech stack
google-cloud, shell
Domain
cloud, data
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
25/100

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