MIT-LCP / MIT-LCP/mimic-code

In BigQuery: missing derived tables in "mimiciv_2_2/mimiciv_3_1"

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Description

Missing tables:

  • rrt
  • colloid
  • sapsii
  • sofa
  • urine_output_rate
  • urine_output
  • ventilation
  • ventilator_setting
  • vitalsigns
  • weight_durations
  • phenylephrine
  • vasopressin

Relevant for:

  • mimiciv_2_2_derived
  • mimiciv_3_1_derived

But does exist for:

  • mimiciv_derived (see _metadata bellow)

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Compare the derived-table listings for mimiciv_2_2_derived and mimiciv_3_1_derived with mimiciv_derived, using the _metadata reference mentioned in the issue. Check the twelve listed tables in BigQuery and identify why they are absent. Done means the listed derived tables are available for both affected datasets and match the existing reference.

Written by the indexing model from the issue text.

Assessment

Tech stack
sql
Domain
databases
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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