MIT-LCP / MIT-LCP/mimic-code

Need to exclude ICU patients admitted between 2008 and 2012 from MIMIC-IV

Open
#1,868 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Jupyter Notebook
Stars
3.4k
Forks
1.7k
PR merge metrics
No merged PRs in 30d

Description

Hello,

I would like to exclude ICU patients in MIMIC-IV who were admitted between 2008 and 2012 for a validation study. Is this possible in MIMIC-IV?

Summary of findings so far:

  • According to the MIMIC-III issue #538, @alistairewj mentioned that the actual year of hospitalization is not available in MIMIC-III (I'm not sure if this is true for MIMIC-IV).
  • As mentioned in the MIMIC-IV documentation ("distinct patients are not temporally comparable"), the deidentified years are not temporally ordered. I believe this means that we cannot simply exclude the first oldest 4 years of admission to obtain the cohort of interest (i.e., patients admitted after 2012).
  • However, the MIMIC-III CareVue subset documentation states, "The date shifting approach was changed in MIMIC-IV to preserve year of admission (with added noise), while the day of the week and season was obscured." What does 'preserve year of admission' mean in MIMIC-IV? Still, I can see 105 different de-identified ICU admit years in MIMIC-IV.

Any suggestions are welcome!

Thanks,
Lasith

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Read the linked MIMIC-IV and MIMIC-III CareVue documentation first, then review issue #538 for the date-shifting context. Done means documenting whether MIMIC-IV preserves admission year and whether a defensible 2008–2012 exclusion can be performed; no repository file or test is named.

Written by the indexing model from the issue text.

Assessment

Domain
databases
Issue type
Documentation
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.