Calculation of MIMIC-III SOFA AUC score over time in original paper
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Description
Prerequisites
- [ X ] Put an X between the brackets on this line if you have done all of the following:
- Checked the online documentation: https://mimic.mit.edu/
- Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=
Description
Description of the issue, including:
- what you have tried
- references to similar issues
- queries demonstrating your question (if applicable)
I am trying to reproduce Figure 2 in https://academic.oup.com/jamia/article/25/1/32/4259424 p.3 / 34 (online / pdf) and unsure as to how to go about achieving the graph as the AUC calculation I do on the SOFA score relative to mortality is lower. Please could you assist / provide code for how that figure was generated? Thanks!
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with Figure 2 in the linked JAMIA paper and the MIMIC-III online documentation; the issue names no repository file, query, or test to run. Compare the SOFA construction, time window, outcome definition, and AUC method against the paper, then document or provide a reproducible calculation whose results match the published figure.
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Assessment
- Domain
- data, databases
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100