Finding lipid components in parenteral nutrition
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Description
Prerequisites
- Put an X between the brackets on this line if you have done all of the following:
- Checked the online documentation: https://mimic.mit.edu/
- Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=
Description
Similar to issue #799 - I have access to MIMIC-IV and I can see how TPN ingredients can be documented both in inputevents and also in ingredientevents. However, I'm having difficulty finding the lipid components for TPN w/ Lipids, which frequently has no additional lipid information under either of the above tables. Do you have any other suggestions of where I might be able to find this information? I've reproduced an example below where I've listed all labels associated with a particular linkorderid in both tables for TPN w/ Lipids.
inputevents:
| orderid | linkorderid | label | amount | amountuom |
|---|---|---|---|---|
| 3616457 | 3616457 | TPN w/ Lipids | 643.233867 | mL |
| 3616457 | 3616457 | Dextrose PN | 108.854961 | grams |
| 3616457 | 3616457 | Amino Acids | 27.21374 | grams |
ingredientevents:
| orderid | linkorderid | label | amount | amountuom |
|---|---|---|---|---|
| 3616457 | 3616457 | Protein | 27.21374 | grams |
| 3616457 | 3616457 | Water | 643.233867 | mL |
| 3616457 | 3616457 | Calories | 478.961836 | Kcal |
| 3616457 | 3616457 | Parenteral Nutrition Ingredient | 643.233867 | mL |
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the MIMIC-IV documentation and related issue #799, then inspect the documented inputevents and ingredientevents tables for the example linkorderid 3616457. Determine whether lipid components are stored elsewhere or are unavailable for this order; document the authoritative source or limitation so the question can be answered.
Written by the indexing model from the issue text.
Assessment
- Domain
- data, databases
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100