Identification of time stamps for intraoperative and postoperative period for cardiac surgery patients in MIMIC-IV
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Description
Prerequisites
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- Checked the online documentation: https://mimic.mit.edu/
- Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=
Description
- Could you help me identify the time stamps for start and end of surgical procedure (e.g. cardiac surgery) in MIMIC-IV.
The surgical procedure is identified byicd_codefromprocedures_icdtable however, the surgical procedure's start and end times are not explicitly mentioned in theprocedureeventstable. There are multiple events in theprocedureeventstable such as 'OR received', 'invasive ventilation', 'chest intubation' etc. Is there a way to find the timestamps so as to find the duration of surgery (corresponding to theicd_codefromprocedures_icdtable)? With such timestamps one can also identify other events strictly during the surgery such as blood loss volume. - Usually patients have extended ICU stay post-surgery for close monitoring of patient's condition, however, I note that
MAX(procedureevents.endtime)for a given patient is similar toicustays.outtime. How does one identify the postoperative period in ICU?
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- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the MIMIC-IV documentation and the procedures_icd, procedureevents, and icustays tables named in the issue. Compare their available timestamps and definitions to determine whether surgical and postoperative periods can be identified; done means providing a documented, reproducible interpretation or confirming that the requested timestamps are unavailable.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- sql
- Domain
- data, databases
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100