Questions in Concept Derive Tables hadm_id
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 3.4k
- Forks
- 1.7k
- PR merge metrics
- No merged PRs in 30d
Description
Discussed in https://github.com/MIT-LCP/mimic-code/discussions/1799
Originally posted by liuxinyuan123 September 22, 2024
When I extract the data from the concepts table, there are many cases repeated, then I find the hadm_id are not included in derived concept tables such as "first_day_lab" and "first_day_bg" and so on, I think it may be a bug or something else?
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Inspect the derived concept tables first_day_lab and first_day_bg and compare their available columns with the source concepts data. Confirm whether hadm_id should be retained in each affected table, then verify that extracting the concepts tables no longer produces the reported repeated cases.
Written by the indexing model from the issue text.
Assessment
- Domain
- database
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100