Linking MIMIC-IV and MIMIC-CXR, under the {subject_id, hadm_id, stay_id} tuple key
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 3.4k
- Forks
- 1.7k
- PR merge metrics
- No merged PRs in 30d
Description
Hello,
I want to create a dataset, comprising of records defined by the {subject_id, hadm_id, stay_id} identifier, i.e., each unique tuple defines one record. I looked at the MIMIC-CXR, but I saw that the columns hadm_id and stay_id do not exist there. I saw that there are only the subject_id and the study_id columns. How can I link only the relevant images to each record?
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. First determine how MIMIC-CXR study_id maps to MIMIC-IV's subject_id, hadm_id, and stay_id, then document a reproducible way to identify the relevant images for each tuple.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering, databases
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100