Add buildmimic code for MIMIC-IV-Note
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 3.4k
- Forks
- 1.7k
- PR merge metrics
- No merged PRs in 30d
Description
Discussed in https://github.com/MIT-LCP/mimic-code/discussions/1490
Originally posted by fantamanatee February 19, 2023
In the Load MIMIC-IV into a PostgreSQL database tutorial, I noticed note events are not included. Since MIMIC IV note was published on Jan 6, is it possible to include MIMIC IV note data in a local postgresql database (while also following the postgresqk tutorial)?
TODO:
- Add schema for
discharge,discharge_detail,radiology,radiology_detailtables - Add load scripts
- Consider database systems other than psql
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the MIMIC-IV PostgreSQL tutorial at mimic-iv/buildmimic/postgres, then review how its existing schemas and load scripts are organized. Add support for the discharge, discharge_detail, radiology, and radiology_detail tables and their load scripts; completion means MIMIC-IV-Note data can be loaded into a local PostgreSQL database following that tutorial. The request also leaves other database systems as a consideration.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- postgresql
- Domain
- database
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100