MIT-LCP / MIT-LCP/mimic-code

Missing discharge dates for CXR imaging patients

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Description

Hello,

I'm looking to find censoring times for a survival analysis task using the MIMIC-CXR-JPG dataset. To do this I'm linking with MIMIC IV 2.0.0, patients, and admissions tables. (MIMIC-IV v2.2 has a bunch of patients dropped to form an internal test set which affects the original splits in the CXR JPG data).

Index dates are set by the date of the images which are available.
Dates of death (dod) are available for a subset of the total patients in the patients table.

Calculating censoring times should be possible as the maximum follow-up time for dod is set to 1 year after the last discharge date. However, I can't find discharge dates for 11,221 patients in the admissions table. This accounts for around 7.8% of total images within the CXR dataset.

Am I missing something? Are patients still in the hospital by the time the study ends? What censoring date can I assume for these patients?

Prerequisites
Description

Description of the issue, including:

  • what you have tried
  • references to similar issues
  • queries demonstrating your question (if applicable)

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  1. Read the whole issue, then the project's contributing guide.
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  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the MIMIC-CXR-JPG linkage with the MIMIC-IV patients and admissions tables, focusing on the 11,221 patients without discharge dates. Verify whether the missing dates reflect the dataset boundary or an issue in the linkage, then document the supported censoring-date assumption for these patients.

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Assessment

Domain
data, databases
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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