MIT-LCP / MIT-LCP/mimic-code

MIMIC3: ICU stays without physician notes

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Description

Prerequisites
Description

In MIMIC-3, we are conducting an NLP task and have come across a rather large group of HADM_IDs that have no corresponding notes of CATEGORY=='Physician', despite a discharge summary that claims a long hospital stay and a long ICU stay (see, for example, HADM_ID==123032). We have attached a CSV with over 7000 examples, though there are likely more examples (these are just the examples relevant to the NLP task we are attempting).

hadmID-without-physician-notes.csv

We are concerned this may represent incomplete data in the MIMIC-III database, as it seems implausible that a patient would have a several day ICU stay without an admission note, progress notes, or nursing notes. Any insight appreciated

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  3. Fork the repository and make your change on a branch.
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Research direction

Start by reviewing the attached hadmID-without-physician-notes.csv and the MIMIC-III online documentation, using HADM_ID 123032 as an example. Compare the reported ICU and hospital stays with the available note categories, especially CATEGORY=='Physician'. Done means documenting whether these cases reflect incomplete data or an expected limitation of the database.

Written by the indexing model from the issue text.

Assessment

Domain
databases
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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