MIMIC3: ICU stays without physician notes
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Description
Prerequisites
- Put an X between the brackets on this line if you have done all of the following:
- Checked the online documentation: https://mimic.mit.edu/
- Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=
Description
In MIMIC-3, we are conducting an NLP task and have come across a rather large group of HADM_IDs that have no corresponding notes of CATEGORY=='Physician', despite a discharge summary that claims a long hospital stay and a long ICU stay (see, for example, HADM_ID==123032). We have attached a CSV with over 7000 examples, though there are likely more examples (these are just the examples relevant to the NLP task we are attempting).
hadmID-without-physician-notes.csv
We are concerned this may represent incomplete data in the MIMIC-III database, as it seems implausible that a patient would have a several day ICU stay without an admission note, progress notes, or nursing notes. Any insight appreciated
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the attached hadmID-without-physician-notes.csv and the MIMIC-III online documentation, using HADM_ID 123032 as an example. Compare the reported ICU and hospital stays with the available note categories, especially CATEGORY=='Physician'. Done means documenting whether these cases reflect incomplete data or an expected limitation of the database.
Written by the indexing model from the issue text.
Assessment
- Domain
- databases
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100