MIT-LCP / MIT-LCP/mimic-code

Is there a difference between patients locally and on Google Cloud

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Description

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Description

I would like to search for patients whose first diagnosis is epilepsy. I found 1,986 patients on my own computer and only 1,238 on Google Cloud. I think it may be caused by the different number of patients. But I tried to check the number of both icustay_detail tables and it is the same. What is the problem? Thanks

Here's my query statement

SELECT DISTINCT subject_id FROM mimic_hosp.diagnoses_icd
where icd_code in ('34500','34501','34510','34511','34540','34541','34550','34551','34560','34561','34570','34571','34580','34581','34590','34591','64940','64941','64942','64943','64944','78033','F445 ','G40 ','G400 ','G4000 ','G40001 ','G40009 ','G4001 ','G40011 ','G40019 ','G401 ','G4010 ','G40101 ','G40109 ','G4011 ','G40111 ','G40119 ','G402 ','G4020 ','G40201 ','G40209 ','G4021 ','G40211 ','G40219 ','G403 ','G4030 ','G40301 ','G40309 ','G4031 ','G40311 ','G40319 ','G404 ','G4040 ','G40401 ','G40409 ','G4041 ','G40411 ','G40419 ','G405 ','G4050 ','G40501 ','G40509 ','G408 ','G4080 ','G40801 ','G40802 ','G40803 ','G40804 ','G40811 ','G40812 ','G40813 ','G40814 ','G4082 ','G40821 ','G40822 ','G40823 ','G40824 ','G4089 ','G409 ','G4090 ','G40901 ','G40909 ','G4091 ','G40911 ','G40919 ','G40A ','G40A0 ','G40A01 ','G40A09 ','G40A1 ','G40A11 ','G40A19 ','G40B ','G40B0 ','G40B01 ','G40B09 ','G40B1 ','G40B11 ','G40B19 ','G8384 ','R561 ')
and seq_num = 1
ORDER BY subject_id

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by running the supplied SQL against the local and Google Cloud mimic_hosp.diagnoses_icd tables, then compare the matching rows and the icustay_detail population. Done means identifying and documenting why the query returns 1,986 versus 1,238 patients.

Written by the indexing model from the issue text.

Assessment

Tech stack
google-cloud, sql
Domain
cloud, databases
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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