MIT-LCP / MIT-LCP/mimic-code

MIMIC-IV: Flag and comments of NTproBNP in labevents

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Description

Prerequisites
Description

I am doing an analysis about NTproBNP (itemid=50963) and using the flag column (normal/abnormal) as my target. For this reason, I would like to know the specific cut-offs of the flag. Although the ref_range_lower and ref_range_upper are provided in the data, I still don't know where these cut-offs come from.

In the comments column it says: "Reference values vary with age, sex, and renal function. at 35% prevalence, NTproBNP values:. < 450 have 99% Neg pred value. >1000 have 78% Pos pred value. See online lab manual for more detailed information.".

However, I can not find the online lab manual in the online documentation. Does anyone know where can I find the information about the cut-offs?
Screen Shot 2022-02-18 at 4 30 23 PM

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the MIMIC online documentation and the referenced labevents data for itemid 50963. Determine where the NTproBNP flag cutoffs and cited online lab manual are documented, then clarify or add that reference so the source of the cutoffs is discoverable.

Written by the indexing model from the issue text.

Assessment

Domain
data, documentation
Issue type
Documentation
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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