Parenteral Nutrition
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Description
Prerequisites
- Put an X between the brackets on this line if you have done all of the following:
- Checked the online documentation: https://mimic.mit.edu/
- Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=
Description
Hi, our research group is very interested in hypoglycemia. For this reason, we are looking into parenteral nutrition, which reduces the risk of adverse hypo events. On MIMIC-III Carevue, the following items can be found for TPN:
| item | name | table | count |
|---|---|---|---|
| 30032 | TPN | inputevents_cv | 204714 |
| 30196 | TPN D10.0 | inputevents_cv | 129029 |
| 30096 | TPN w/Lipids | inputevents_cv | 50191 |
| 30197 | TPN D11.0 | inputevents_cv | 29966 |
| 30199 | TPN D12.5 | inputevents_cv | 27589 |
| 30198 | TPN D12.0 | inputevents_cv | 21246 |
| 30200 | TPN D15.0 | inputevents_cv | 21023 |
| 30325 | TPN D13.0 | inputevents_cv | 16269 |
| 30194 | TPN D9.0 | inputevents_cv | 12788 |
| 30313 | TPN D14 | inputevents_cv | 12481 |
| 30301 | TPN D8 | inputevents_cv | 11934 |
| 30191 | TPN D5.0 | inputevents_cv | 10195 |
| 30193 | TPN D7.5 | inputevents_cv | 8204 |
Putting all the items together, there are around 600k entries.
However, TPN appears in far fewer item names in Metavision:
| item | name | table | count |
|---|---|---|---|
| 225916 | TPN w/ Lipids | inputevents_mv | 6009 |
| 225917 | TPN without Lipids | inputevents_mv | 3843 |
Do you perhaps know where parenteral nutrition is hiding on MIMIC-III Metavision / MIMIC-IV? Would be incredibly helpful.
Best,
Drago
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the MIMIC online documentation and the Carevue and Metavision inputevents_cv/inputevents_mv tables named in the issue. Compare the listed TPN item identifiers across MIMIC-III Metavision and MIMIC-IV, and document where parenteral nutrition entries can be found. Done means a maintainer-confirmed mapping or explanation of the relevant items and tables.
Written by the indexing model from the issue text.
Assessment
- Domain
- data, databases
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100