Confusion about updating MISP after generating new warninglist list.json files

Maybe we've been doing it all wrong, but we have been running the tools/generate-crl-ip-domains.py script periodically in order to keep our warninglist updated.

Today, I went to update MISP via the web UI and hit this error while it was updating the submodule for misp-warninglists.

error: Your local changes to the following files would be overwritten by checkout:
	lists/crl-hostname/list.json
	lists/crl-ip/list.json
Please commit your changes or stash them before you switch branches.
Aborting
Unable to checkout '99c64074101b3b3a18727564350070895a4e0216' in submodule path 'app/files/warninglists'

The web UI seems to read from these git-managed files when it updates the warninglists, so I assume we are meant to update at this location:

 /var/www/MISP/app/files/warninglists/lists/crl-ip/list.json

But if we update there, how are we meant to clean up so that we can do MISP updates?

Start with tools/generate-crl-ip-domains.py and the web UI's app/files/warninglists submodule, including lists/crl-ip/list.json and lists/crl-hostname/list.json. Determine the supported workflow for regenerating these files, committing or reverting local changes, and updating the submodule; done means the process is documented without blocking future MISP updates.