ME-ICA / ME-ICA/open-multi-echo-data
Finalize fMRIPrep settings
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Description
I'm planning to use version 23.1.5 (once it's released), since it has some nice CIFTI improvements.
Here are my planned settings:
```
--output-spaces func:res-native T1w:res-native MNI152NLin6Asym:res-2
--output-layout bids
--level full
--me-t2s-fit-method curvefit
--me-output-echos
--project-goodvoxels
--cifti-output
--slice-time-ref 0 # this should simplify the analysis for task data
--random-seed 0
```
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue only lists planned fMRIPrep 23.1.5 settings and does not name a file, test, entry point, or concrete change. First clarify whether this is a dataset-processing configuration decision, then identify the relevant workflow location and define completion criteria for the finalized settings.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100