ME-ICA / ME-ICA/open-multi-echo-data

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Description

I'd like to start running open multi-echo datasets through fMRIPrep and afni_proc.py, if an AFNI person could provide some recommendations there (@handwerkerd?), and publishing the results to GitHub and GIN. As long as I can get the process fairly simplified, I can run these jobs on UPenn's cluster.

@jsheunis's `multi-echo-super` repo (https://github.com/jsheunis/multi-echo-super) is very similar in scope, and I don't want to duplicate effort, so we can maybe figure out how best to divide any efforts. @jsheunis, I don't know if you're still working on that repo.

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Research direction

Start by reviewing the related multi-echo-super repository and comparing its scope with this issue. Then identify the recommendations needed for fMRIPrep and afni_proc.py, along with the process for publishing results to GitHub and GIN. The issue does not define a clear completion condition beyond simplifying the workflow.

Written by the indexing model from the issue text.

Assessment

Tech stack
github
Domain
data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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