LEMS / LEMS/org.lemsml.model

Things enabled by this project

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Dominant language
Java
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0
Forks
2
PR merge metrics
No merged PRs in 30d

Description

We can finally start ticking these boxes, and fix bugs as they appear (infrastructure almost usable!)

OSB/geppetto: discuss with @adrianq @tarelli

  • no need to parse neuroml models twice (as nml and as lems). We get org.?ml.model.DomainType extends org.lemsml.model.Component
  • plotting arbitrary expressions. Components have a scope.evaluate(symbol) method.
  • rendering equations as mathml. There are methods to render expressions as mathml(tex), C, java, python (and anything else we care to implement).
  • getting lists of cells/networks/channels independently of file names (i.e. na.channel.nml). There are methods to get all components of a given type (including extensions).

Elsewhere:

  • automatic generation of API / xml schema directly from Lems Component Types. No more duplication of work maintaining defs and a xsd! See here
  • code generation via a "proper"(room for a lot of improvement) semantic model for Lems, with a well defined pipeline (visitors) for producing intermediate representations and merging them with templates.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

This issue is a broad roadmap covering equation rendering, API/XML-schema generation, and code generation; it names no files, tests, or entry points. Start by reading the project structure and the linked neuroml2model reference, then clarify which unchecked capability is in scope and what completion criteria apply.

Written by the indexing model from the issue text.

Assessment

Tech stack
java, python
Domain
compilers, tooling
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
15/100

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