slow5 version
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Go
- Stars
- 38
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
slow5 version should be in the Header, not the HeaderValue. In addition, HeaderValues don't take care of ordering / multiple read groups right now
type Header struct {
HeaderValues []HeaderValue
}
type HeaderValue struct {
ReadGroupID uint32
Slow5Version string
Attributes map[string]string
EndReasonHeaderMap map[string]int
}
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the Header and HeaderValue definitions and the code that reads or writes slow5 headers. Review how HeaderValues currently represent ordering and multiple read groups. Done means the version belongs to Header and header values preserve ordering and multiple read groups, with existing tests updated or added where the behavior is covered.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- go
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100