KavrakiLab / KavrakiLab/MetaTrans
Inconsistency between metabolites and predicted scores in ibuprofen
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- Python
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Description
Thank you for providing this tool to predict metabolites.
I am trying to extract the unique metabolites of ibuprofen together with the respected predicted scores. For this reason, I created a set of scripts called space.sh (to provide the scores and metabolites without spaces from "ibu_augoustos.txt"), and Extract_score_of_metabolites.py (this create a file like "ibuprofen_metabolites.csv" that reports the unique metabolites of ibuprofen (taken from "ibu_met_augoustos.csv") and extracts their scores from "ibu_augoustos.txt".
However, in the "ibuprofen_metabolites.csv" you can find that two unique metabolites ("CC(C)c1ccc(C(C)C(=O)OC2O[C@H](C(=O)O)[C@@H](O)[C@H](O)[C@H]2O)cc1" and "CC(C)c1ccc(C(C)C(=O)O[C@@H]2O[C@H](C(=O)O)[C@@H](O)[C@H](O)[C@H]2O)cc1") did not present any score. I also searched to the initial produced files from the tool but I was not able to find these two. Can you kindly help me with this issue?
Thank you in advance for your time and support.
[ibu_augoustos.txt](https://github.com/KavrakiLab/MetaTrans/files/12301318/ibu_augoustos.txt)
[ibu_met_augoustos.csv](https://github.com/KavrakiLab/MetaTrans/files/12301319/ibu_met_augoustos.csv)
[Extract_score_of_metabolites.txt](https://github.com/KavrakiLab/MetaTrans/files/12301321/Extract_score_of_metabolites.txt)
[transpose_copy.txt](https://github.com/KavrakiLab/MetaTrans/files/12301322/transpose_copy.txt)
[space_copy.txt](https://github.com/KavrakiLab/MetaTrans/files/12301323/space_copy.txt)
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