JuliaGaussianProcesses / JuliaGaussianProcesses/ParameterHandling.jl
Using flatten/unflatten for Automatic Differentiation
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Description
Hi there,
Really nice package!
I was wondering if one can adjust the flatten/unflatten functions, such that unflatten is also working inside a closure for using Automatic Differentation.
At the moment, it seems that the type constraints cannot handle Duals. MWE:
using ParameterHandling, Distributions, ReverseDiff, ForwardDiff
# Get sample data and parameter
val = ( μ = 1., σ = 2. )
data = randn(100)
# Write down a logdensity with parameter and data as arguments
function log_density(val, data)
return sum( Distributions.logpdf(Distributions.Normal(val.μ, val.σ), data[iter] ) for iter in eachindex(data) )
end
log_density(val, data)
# Closure for transforming θ Vector to NamedTuple
function get_log_target(val, data)
_, unflatten = ParameterHandling.flatten(val)
function log_target(θ::AbstractVector{T}) where T
return log_density( unflatten(θ), data)
end
end
# Check if it is working
lt = get_log_target(val, data)
theta = [.1, .2]
lt(theta)
# Method Error for Dual numbers
ForwardDiff.gradient(lt, theta) # MethodError: no method matching (::ParameterHandling.var"#unflatten_to_NamedTuple#15...
ReverseDiff.gradient(lt, theta) # MethodError: no method matching (::ParameterHandling.var"#unflatten_to_NamedTuple#15"{Float64, NamedTuple{(:μ, :σ)
Zygote was actually working for this toy example, but breaks when used with more complex examples (and was not very fast).
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Research direction
Start by locating the flatten/unflatten implementation and reproduce the supplied MWE with ForwardDiff.gradient and ReverseDiff.gradient. Trace the type constraints involved when unflatten is called inside log_target; done means both gradient calls work for the closure without the reported MethodError.
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Assessment
- Tech stack
- julia
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100