JuliaDataCubes / JuliaDataCubes/YAXArrays.jl

Cannot save WorldClim Elevation data to .tif

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Julia
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Description

When I try to use savecube to resave the WorldClim elevation to tif I get the following error:

using YAXArrays
using RasterDataSources
elevpath = getraster(WorldClim{Elevation},:elev, res="30s")
elev = Cube(elevpath)
zarrpath = tempname() * ".zarr"
julia> savecube(elev, zarrpath)
ERROR: Could not determine output projection from attributes, please specify userproj
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:35
 [2] getproj(::Nothing, attrs::Dict{String, Any})
   @ YAXArrayBase ~/.julia/packages/YAXArrayBase/R6Frw/src/datasets/archgdal.jl:127
 [3] create_dataset(::Type{…}, outpath::String, gatts::Dict{…}, dimnames::Vector{…}, dimvals::Vector{…}, dimattrs::Vector{…}, vartypes::Vector{…}, varnames::Vector{…}, vardims::Vector{…}, varattrs::Vector{…}, varchunks::Vector{…}; userproj::Nothing, kwargs::@Kwargs{})
   @ YAXArrayBase ~/.julia/packages/YAXArrayBase/R6Frw/src/datasets/archgdal.jl:157
 [4] create_dataset(::Type{…}, outpath::String, gatts::Dict{…}, dimnames::Vector{…}, dimvals::Vector{…}, dimattrs::Vector{…}, vartypes::Vector{…}, varnames::Vector{…}, vardims::Vector{…}, varattrs::Vector{…}, varchunks::Vector{…})
   @ YAXArrayBase ~/.julia/packages/YAXArrayBase/R6Frw/src/datasets/archgdal.jl:134
 [5] savedataset(ds::Dataset; path::String, persist::Nothing, overwrite::Bool, append::Bool, skeleton::Bool, backend::Symbol, driver::Symbol, max_cache::Float64, writefac::Float64, kwargs::@Kwargs{})
   @ YAXArrays.Datasets ~/.julia/packages/YAXArrays/zyFvF/src/DatasetAPI/Datasets.jl:571
 [6] savedataset
   @ ~/.julia/packages/YAXArrays/zyFvF/src/DatasetAPI/Datasets.jl:521 [inlined]
 [7] savecube(c::YAXArray{…}, path::String; layername::String, datasetaxis::String, max_cache::Float64, backend::Symbol, driver::Symbol, chunks::Nothing, overwrite::Bool, append::Bool, skeleton::Bool, writefac::Float64, kwargs::@Kwargs{})
   @ YAXArrays.Datasets ~/.julia/packages/YAXArrays/zyFvF/src/DatasetAPI/Datasets.jl:637
 [8] savecube(c::YAXArray{Union{…}, 2, DiskArrayTools.CFDiskArray{…}, Tuple{…}, Dict{…}}, path::String)
   @ YAXArrays.Datasets ~/.julia/packages/YAXArrays/zyFvF/src/DatasetAPI/Datasets.jl:617
 [9] top-level scope
   @ REPL[75]:1
Some type information was truncated. Use `show(err)` to see complete types.

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  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with savecube in YAXArrays.Datasets at Datasets.jl:617-637, then trace the getproj and create_dataset calls shown in YAXArrayBase's archgdal.jl at lines 127-157. Reproduce the WorldClim elevation example and clarify the expected TIFF output versus the zarrpath used in the report; done means saving the elevation data completes without the projection error.

Written by the indexing model from the issue text.

Assessment

Tech stack
julia
Domain
data
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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