JuliaDataCubes / JuliaDataCubes/EarthDataLab.jl
Better Error message for failed cubefromshape
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Description
When I try to make a cubefromshape on a Cube which have X and Y axes instead of "Lat" and "Lon" Axes I get the following error.
I can circumvent the problem by renaming my axes before I do the cubefromshape but I think it would be nice to give the user a hint to do that and to have a more informing errror message.
ERROR: MethodError: no method matching length(::Nothing)
Closest candidates are:
length(::DataStructures.DiBitVector) at /home/crem_fe/.julia/packages/DataStructures/DLSxi/src/dibit_vector.jl:40
length(::IRTools.Inner.CFG) at /home/crem_fe/.julia/packages/IRTools/aSVI5/src/passes/passes.jl:18
length(::VSCodeServer.JSON.Parser.MemoryParserState) at /home/crem_fe/.vscode/extensions/julialang.language-julia-1.0.10/scripts/packages/JSON/src/Parser.jl:29
...
Stacktrace:
[1] cubefromshape_single(::String, ::Nothing, ::Nothing; labelsym::Nothing, T::Type{T} where T, kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:wrap,),Tuple{Nothing}}}) at /home/crem_fe/.julia/dev/ESDL/src/Shapes.jl:52
[2] cubefromshape(::String, ::Vararg{Any,N} where N; samplefactor::Nothing, kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:wrap,),Tuple{Nothing}}}) at /home/crem_fe/.julia/dev/ESDL/src/Shapes.jl:77
[3] cubefromshape(::String, ::YAXArray{Union{Missing, Float32},4,DiskArrayTools.DiskArrayStack{Union{Missing, Float32},4,Zarr.ZArray{Union{Missing, Float32},3,Zarr.BloscCompressor,Zarr.DirectoryStore},1},Array{CubeAxis,1}}; kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:wrap,),Tuple{Nothing}}}) at /home/crem_fe/.julia/dev/ESDL/src/Shapes.jl:74
[4] randinds(::YAXArray{Union{Missing, Float32},4,DiskArrayTools.DiskArrayStack{Union{Missing, Float32},4,Zarr.ZArray{Union{Missing, Float32},3,Zarr.BloscCompressor,Zarr.DirectoryStore},1},Array{CubeAxis,1}}, ::String, ::Int64; seed::Int64, nsamples::Int64, wrap::Nothing, inner::Bool) at /home/crem_fe/.julia/dev/ESDLHelpers/src/shapesampling.jl:31
[5] getsample(::YAXArray{Union{Missing, Float32},4,DiskArrayTools.DiskArrayStack{Union{Missing, Float32},4,Zarr.ZArray{Union{Missing, Float32},3,Zarr.BloscCompressor,Zarr.DirectoryStore},1},Array{CubeAxis,1}}, ::String, ::Int64, ::Int64; seed::Int64, nsamples::Int64, wrap::Nothing, inner::Bool) at /home/crem_fe/.julia/dev/ESDLHelpers/src/shapesampling.jl:47
[6] get_data(::YAXArray{Union{Missing, Float32},4,DiskArrayTools.DiskArrayStack{Union{Missing, Float32},4,Zarr.ZArray{Union{Missing, Float32},3,Zarr.BloscCompressor,Zarr.DirectoryStore},1},Array{CubeAxis,1}}, ::String, ::Array{String,1}) at /home/crem_fe/Documents/papers_wip/EMDAmazonas/scripts/intro_sorted.jl:74
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First steps
- Read the whole issue, then the project's contributing guide.
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- Open a pull request that references the issue number.
Research direction
Start in src/Shapes.jl at cubefromshape_single on line 52 and follow the cubefromshape calls around lines 74 and 77. Reproduce the failure with a Cube whose axes are named X and Y instead of Lat and Lon. Done means the operation reports an informative error and hints that the axes can be renamed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- julia
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100