Failure when using Gradle 8.11.1

When using this plugin in Gradle 8.11, it runs afoul of the [disallowed types for serialization](https://docs.gradle.org/8.11.1/userguide/configuration_cache.html#config_cache:requirements:disallowed_types) by referencing `Project` it appears. These references should be replaced with dependency injection for the specific operation type desired. It looks like most of the references are `project.logger` or `project.exec` which can use `Task.logger` and `ExecOperations.exec` respectively.

```
* What went wrong:
Configuration cache problems found in this build.

1 problem was found storing the configuration cache.
- Task `:Bootstrap_CONDA_'miniconda'` of type `org.gradle.api.DefaultTask`: cannot serialize object of type 'org.gradle.api.internal.project.DefaultProject', a subtype of 'org.gradle.api.Project', as these are not supported with the configuration cache.
See https://docs.gradle.org/8.11.1/userguide/configuration_cache.html#config_cache:requirements:disallowed_types
```