allow more than one identifier for ISA.Study
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 48
- Forks
- 42
- PR merge metrics
- No merged PRs in 30d
Description
BH-2023: discussion about submission brokering to EMBL-EBI repositories of multiomics
scenario: 1 ISA with multimodal assays -> several distinct study identifiers, one for each EMBL repository (Metabolights, ENA, SRA, ArrayExpress)
use case: ARC (https://raw.githubusercontent.com/nfdi4plants/arc2repo/main/inv.json)
"identifier" : { "type" : "string" }, -> "identifier" : { "type" : "array" },
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the ISA.Study schema and the code that reads or validates its identifier field. Compare the expected structure with the ARC example in inv.json and check existing validation coverage. Done means an ISA study can preserve a single identifier or accept distinct identifiers for multiple EMBL-EBI repositories without breaking existing data.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- api, data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100