ISA-tools / ISA-tools/isa-api

sra2isa conversion: add support for SRA Pool/Pool_Member representation

Open
#153 0 comments 0 reactions 1 assignee View on GitHub

@proccaserra is already working on this.

Since Oct 13, 2016.

bug convert low priority
Dominant language
Python
Stars
48
Forks
42
PR merge metrics
No merged PRs in 30d

Description

reported by John Matese at Princeton when converting SRP068846
http://www.ebi.ac.uk/ena/data/view/SRX1544187

also, the representation pattern used in this project departs from the one supported, which relies on defining 'multiplex identifier' as defined by MIXS checklists and supported by the corresponding ISA configuration for metagenomics studies and for targeted gene surveys.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.