INCATools / INCATools/ontology-access-kit
Chore: Gilda annotate changes return data format in release 1.5.0
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- Dominant language
- Python
- Stars
- 198
- Forks
- 35
- Avg merge
- 3d 4h
- Merged PRs (30d)
- 1
Description
In Gilda==1.5.0 annotate was changed to return an object instead of a tuple, so the following line fails.
Currently we downgrade to Gilda<1.5 to avoid this
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at src/oaklib/implementations/gilda.py around line 78 and compare the annotate return format in Gilda 1.5.0 with the current handling. Update the integration so Gilda 1.5.0 works without the current Gilda<1.5 downgrade, then run the relevant project tests if available.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- backend
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 55/100