INCATools / INCATools/ontology-access-kit
Chore: Backslash character in test data causes pronto to have error
- Dominant language
- Python
- Stars
- 198
- Forks
- 35
- Avg merge
- 3d 4h
- Merged PRs (30d)
- 1
Description
Currently have to downgrade pronto to <2.6 because of line 3705 below
https://github.com/INCATools/ontology-access-kit/blob/aaede8e497e98fe7677e82730eeb56039241ac3b/tests/input/interneuron.obo#L3704-L3706
It can't handle a backslash in while parsing the file. Interested to know if this is a format error in the obo file or a bug in pronto.
Contributor guide
Research direction
Start with tests/input/interneuron.obo around lines 3704-3706 and reproduce parsing it with pronto 2.6 or later. Check whether the backslash is valid OBO syntax or exposes a pronto parsing bug; done means documenting the cause and resolving the incompatibility with a focused regression test or confirmed format correction.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100