INCATools / INCATools/ontology-access-kit
expand value set command should allow for configurable materialized values
- Dominant language
- Python
- Stars
- 198
- Forks
- 35
- Avg merge
- 3d 4h
- Merged PRs (30d)
- 1
Description
Current the tool assumes you want to refer to a materialized enum PV by its curie; in fact this may vary, others may want
* expanded URLs
* labels
- with or without space replacement to camelcase/uppercase etc
* ad-hoc schemes such as MIxS `combine harvester [AGRO:00000473]`
* others
We can't anticipate all forms but we can allow passing in of an fstring (I don't think this should be schema-driven), with save evaluation materializing as preferred
Contributor guide
Research direction
Start with the implementation of the expand value set command and trace how materialized enum values are currently represented by CURIEs. Define how a caller supplies an f-string and how save-time evaluation materializes the preferred value; done should support configurable CURIE, URL, label, and ad-hoc formats.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100