INCATools / INCATools/ontology-access-kit
bioportal client should implement mapping between OBO prefixes and bioportal prefixes
Open
- Dominant language
- Python
- Stars
- 198
- Forks
- 35
- Avg merge
- 3d 4h
- Merged PRs (30d)
- 1
Description
Currently using the bioportal client with some ontologies like FBbt, WBbt results in failure, because bioportal uses different names eg FB-BT
We should implement the mapping - using bioregistry? in this lib or in https://github.com/cthoyt/ontoportal-client?
Contributor guide
Research direction
Start by tracing the bioportal client entry point and reproducing the FBbt or WBbt failure. Compare the OBO and BioPortal prefixes, then review bioregistry and ontoportal-client to determine where the mapping belongs. Done means these ontology lookups work without breaking existing client behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- api
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100