INCATools / INCATools/ontology-access-kit

bioportal client should implement mapping between OBO prefixes and bioportal prefixes

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Dominant language
Python
Stars
198
Forks
35
Avg merge
3d 4h
Merged PRs (30d)
1

Description

Currently using the bioportal client with some ontologies like FBbt, WBbt results in failure, because bioportal uses different names eg FB-BT

We should implement the mapping - using bioregistry? in this lib or in https://github.com/cthoyt/ontoportal-client?

Contributor guide

Open the contributing guide

Research direction

Start by tracing the bioportal client entry point and reproducing the FBbt or WBbt failure. Compare the OBO and BioPortal prefixes, then review bioregistry and ontoportal-client to determine where the mapping belongs. Done means these ontology lookups work without breaking existing client behavior.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
api
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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