INCATools / INCATools/ontology-access-kit
Add parameter `drop_dangling_nodes` in oi.relationships()
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- Dominant language
- Python
- Stars
- 198
- Forks
- 35
- Avg merge
- 3d 4h
- Merged PRs (30d)
- 1
Description
This issue arises from the process of accelerating the edge file generation in this PR: https://github.com/INCATools/oakx-grape/pull/15
While generating edge files with s, p and o, dangling nodes may not be helpful for further analysis. It would be nice to have an option to drop them or use them by indication of a flag: `drop_dangling_nodes`
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the `oi.relationships()` entry point and review the edge-file generation context in oakx-grape PR 15. Determine how dangling nodes are identified and how the new `drop_dangling_nodes` flag should affect the returned relationships; done means the option is supported and its behavior is covered by relevant tests.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- api
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100