INCATools / INCATools/kgcl

Support arbitrary axiom annotations

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#12 4 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
23
Forks
5
PR merge metrics
No merged PRs in 30d

Description

For many use cases we need to be able to add provenance on axioms. I have zero ideas about the syntax, here is some pseudo code:

add axiom-annotation sssom:object_label "sarcoma" to { MONDO:123 oboInOwl:hasDbXref "DOID:123"}

Contributor guide

Open the contributing guide

Research direction

The issue provides only pseudo-code and names no files, tests, or entry points. Start by locating the KGCL syntax and axiom model, then determine the annotation syntax and representation needed for arbitrary axiom annotations. Done means the proposed form is supported and covered by tests for the shown provenance example.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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