INCATools / INCATools/dosdp-tools
DOSDPT reports missing columns when missing values
Open
Nobody has claimed this yet.
- Dominant language
- Scala
- Stars
- 33
- Forks
- 5
- PR merge metrics
- No merged PRs in 30d
Description
Zero priority but fast one to fix: If the tsv file is empty, DOSDPT currently warns:
```
2020.02.23 11:09:00 [WARN] org.monarchinitiative.dosdp.cli.Generate.$anonfun:56:51 - Input is missing column for pattern variable
```
Should be "no values".
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the warning with an empty TSV file, then inspect the DOSDPT CLI path that emits the message, identified in the report as Generate. Confirm the empty-input case is treated as having no values and verify that the warning uses "no values" rather than reporting a missing column.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- scala
- Domain
- cli
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100