INCATools / INCATools/dosdp-tools
Q: When running DOSDP query, can entity_label columns be populated?
- Dominant language
- Scala
- Stars
- 33
- Forks
- 5
- PR merge metrics
- No merged PRs in 30d
Description
Currently, when running:
```
dosdp-tools query --ontology=dpo-edit.owl --reasoner=elk --template=../patterns/dosdp-patterns/dpoAbnormalEntity.yaml --obo-prefixes=true --outfile=../patterns/data/original/dpoAbnormalEntity.tsv
```
I get a tsv like this:
```
defined_class defined_class_label entity entity_label quality quality_label
http://purl.obolibrary.org/obo/FBcv_0000423 DNA repair defective http://purl.obolibrary.org/obo/GO_0006281 http://purl.obolibrary.org/obo/PATO_0000001
```
So there are columns for entity_label and quality_label, but no values in them. Is there a way to get this column populated?
Thanks a lot :)
Contributor guide
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Research direction
Start by reproducing the issue with the shown dosdp-tools query command, dpoAbnormalEntity.yaml template, and generated TSV. Trace how the query result populates the entity_label and quality_label columns. Done means determining whether those columns can be populated and documenting or implementing the required behavior, with a regression test if the project has coverage for query output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- scala
- Domain
- cli
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100