HenriquesLab / HenriquesLab/ZeroCostDL4Mic
StarDist2D path issue: models are not stored in the user defined location
Open
@esgomezm is already working on this.
Since Apr 8, 2025.
- Dominant language
- Jupyter Notebook
- Stars
- 652
- Forks
- 144
- PR merge metrics
- No merged PRs in 30d
Description
Describe the bug
- The trained model is not saved in the user defined location
- notebook version v1.20
To Reproduce
Steps to reproduce the behavior:
Run ZeroCostDL4Mic StarDist 2D on Google Colab with the sample data provided in the notebook and the default settings.
When running StarDist 2D locally on a Windows machine using Zereocolstdl4MicEverywhere, a similar path problem exists. The model is saved to a location different from what is defined in the notebook.
Expected behavior
On Google Colab: model should be saved in content/data/results/test, but is instead saved to /data/results/test
Screenshots
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.