HenriquesLab / HenriquesLab/ZeroCostDL4Mic
StarDist_3D_ZeroCostDL4Mic notebook issue installing dependencies
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 652
- Forks
- 144
- PR merge metrics
- No merged PRs in 30d
Description
In the Stardist 3D collab notebook, there is an issue with section 1.1 Install Stardist in the code cell "Install Stardist and Dependencies" when running in Colab on Chrome. I believe there is an issue with compatibility of the dependencies. Unfortunately I cannot paste the error below since I have no colab compute units available at the moment to reproduce the error I received yesterday :) However, the issue can be reproduced by running the first code cell.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the Stardist 3D ZeroCostDL4Mic notebook and run the first code cell, specifically section 1.1, "Install Stardist and Dependencies," in Google Colab on Chrome. Identify the dependency compatibility error and confirm that the cell completes successfully with the required Stardist installation.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100