HenriquesLab / HenriquesLab/ZeroCostDL4Mic
Unable to use the TF_SavedModel in Stardist 2D plugin in Fiji
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 652
- Forks
- 144
- PR merge metrics
- No merged PRs in 30d
Description
Hi there,
Thanks for developing the ZerCostDL4Mic platform. I was able to train my StarDist 2D model using the colab notebook, however when I try to download the TF_SavedModel and use in Fiji, it doesn't work. Can I please get some advice on what could the problem be and what I can do next?
To Reproduce
The TF_SavedModel was downloaded from the model folder and opened as 'Model (zip) from file' in StarDist 2D plugin in Fiji.
Expected behavior
Screenshots
Desktop (please complete the following information):
- OS: Windows 11
- Browser: chrome,
- Version: Notebook_version = '1.19'
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the TF_SavedModel from the model folder and the StarDist 2D plugin in Fiji, using the reported Windows 11 environment and notebook version 1.19. Reproduce the import failure and inspect the attached screenshots; no repository file or test is identified, and done means documenting a verified cause and next step.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, tensorflow
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100