HenriquesLab / HenriquesLab/ZeroCostDL4Mic
Error in 1.3. Load key dependencies StarDist_2D
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- Jupyter Notebook
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Description
Hello, I run into the following problem trying to load key dependencies for StarDist_2D (1.3. Load key dependencies). Installation of 1.1 StarDist and dependencies goes fine.
2.11.0
Tensorflow enabled.
Libraries installed
Notebook version: 1.18
Latest notebook version: 1.18
This notebook is up-to-date.
ValueError Traceback (most recent call last)
in
472 # Build requirements file for local run
473 after = [str(m) for m in sys.modules]
--> 474 build_requirements_file(before, after)
3 frames
/usr/local/lib/python3.9/dist-packages/pandas/io/parsers/readers.py in _refine_defaults_read(dialect, delimiter, delim_whitespace, engine, sep, error_bad_lines, warn_bad_lines, on_bad_lines, names, prefix, defaults)
1534
1535 if delimiter == "\n":
-> 1536 raise ValueError(
1537 r"Specified \n as separator or delimiter. This forces the python engine "
1538 "which does not accept a line terminator. Hence it is not allowed to use "
ValueError: Specified \n as separator or delimiter. This forces the python engine which does not accept a line terminator. Hence it is not allowed to use the line terminator as separator.
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- Read the whole issue, then the project's contributing guide.
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Research direction
Start with the StarDist_2D notebook's 1.3 Load key dependencies step and the cell calling build_requirements_file, then inspect the pandas parser traceback shown in the issue. Reproduce the failure in the notebook environment and verify that the dependency-loading step completes without the delimiter ValueError.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, pandas, python, tensorflow
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100