HenriquesLab / HenriquesLab/ZeroCostDL4Mic
Stardist error message when running multiple images in google drive
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- Dominant language
- Jupyter Notebook
- Stars
- 652
- Forks
- 144
- PR merge metrics
- No merged PRs in 30d
Description
Hello,
I am using Stardist with Google Collab and am running into the error below. Stardist ran fine about a month ago, but then I didn’t touch or change anything while working on some post-processing issues and when I returned to use Stardist, I am recieving this error message. My google drive has a folder of several images, but Stardist only runs the first image in the folder and then gives me this error. The first image runs through Stardist as expected and saves to my google drive, but Stardist seems to be unable to move onto the next image. Thank you for the help
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the Stardist run in Google Colab with the Google Drive folder and inspect the attached error after the first image completes. No source file or test is identified in the report, so first locate the notebook entry point that processes the image folder. Done means all images run successfully and their outputs are saved to Google Drive.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- google-cloud, jupyter-notebook
- Domain
- cloud, machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100