Controller occasionally won't stop rumbling

This issue has been around since at least Rachel Bravo on Windows, and persists through Zhora Foxtrot. Three different users playing with Xbox controllers have run into the issue (myself included, with a PowerA Xbox One controller).
It appears to only happen when SoH is not the focused window. For example, I have Chrome up on a second monitor with an item tracker for rando when it happens. Bonking (or any other new cause for a rumble) or re-focusing on SoH ends the persistent rumble.

Some situations where the persistent rumble started:
- Twice in short succession in Goron City as child, detonating bombchus with deku nuts to break through the walls on the way to Medigoron caused it. I believe Link was caught in the blast zone and took damage.
- In the Goron City maze, picking up a rock while a bombchu detonated somehow caused a persistent rumble (though truth be told, I don't remember how close the bomchu detonated)
- Blowing up the interior wall skulltula in Lon Lon Ranch with a bombchu and taking damage from the explosion started a persistent rumble.
- Twice in bombchu bowling, the rumble started. The first time after hitting the second target located in the top middle, the second time after narrowly missing the final target.
- As adult in Deku Tree, jumping from the middle level (by the door leading to the slingshot) into the basement caused it, initiated by the fall damage rumble.

There were a number of other times, but those were the examples I felt confident on the details of. Hopefully that gives enough detail to recreate it!