GuangchuangYu / GuangchuangYu/hexSticker
example causes R segfault
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Description
I came across this package a while ago and finally got around to taking it for a test drive. I was quite excited about making hex stickers for several of my own packages, but, unfortunately, upon trying it out today, I discovered I cannot even run the example (for working with image files) in the README relevant to my intended use case:
❯ imgurl <- "http://www.belleamibengals.com/bengal_cat_2.png"
❯ sticker(imgurl, package="hexSticker", p_size=8, s_x=1, s_y=.75, s_width=.6, filename="./imgfile.png")
*** caught segfault ***
address 0x0, cause 'unknown'
Traceback:
1: grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, x$check.overlap)
2: drawDetails.text(x, recording = FALSE)
3: drawDetails(x, recording = FALSE)
4: drawGrob(x)
5: recordGraphics(drawGrob(x), list(x = x), getNamespace("grid"))
6: grid.draw.grob(x$children[[i]], recording = FALSE)
7: grid.draw(x$children[[i]], recording = FALSE)
8: drawGTree(x)
9: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
10: grid.draw.gTree(x$children[[i]], recording = FALSE)
11: grid.draw(x$children[[i]], recording = FALSE)
12: drawGTree(x)
13: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid"))
14: grid.draw.gTree(gtable)
15: grid.draw(gtable)
16: print.ggplot(x)
17: print(x)
18: grid.draw.ggplot(plot)
19: grid.draw(plot)
20: ggsave(sticker, width = 43.9, height = 50.8, filename = filename, bg = "transparent", units = "mm")
21: save_sticker(filename, sticker)
22: sticker(imgurl, package = "hexSticker", p_size = 8, s_x = 1, s_y = 0.75, s_width = 0.6, filename = "./imgfile.png")
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
I'm not exactly sure what might be going on internally, so some help in diagnosing and resolving this problem would be much appreciated.
Here's the relevant session information:
❯ sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-apple-darwin16.6.0 (64-bit)
Running under: macOS Sierra 10.12.5
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] hexSticker_0.4.1 forcats_0.2.0 stringr_1.2.0.9000
[4] dplyr_0.7.2 purrr_0.2.2.2 readr_1.1.1
[7] tidyr_0.6.3 tibble_1.3.3 ggplot2_2.2.1
[10] tidyverse_1.1.1.9000 devtools_1.13.2.9000 nima_0.4.0
[13] fcuk_0.1.21 colorout_1.1-2 prompt_1.0.0
loaded via a namespace (and not attached):
[1] locfit_1.5-9.1 Rcpp_0.12.12 stringdist_0.9.4.4
[4] lubridate_1.6.0.9009 lattice_0.20-35 sysfonts_0.6
[7] fftwtools_0.9-8 png_0.1-7 clisymbols_1.2.0
[10] gtools_3.5.0 assertthat_0.2.0 digest_0.6.12
[13] psych_1.7.5 tiff_0.1-5 R6_2.2.2
[16] cellranger_1.1.0 plyr_1.8.4 httr_1.2.1
[19] rlang_0.1.1.9000 lazyeval_0.2.0 readxl_1.0.0
[22] data.table_1.10.4 rstudioapi_0.6 ProjectTemplate_0.7
[25] hexbin_1.27.1 boxes_0.0.0.9000 foreign_0.8-69
[28] munsell_0.4.3 broom_0.4.2 compiler_3.4.1
[31] modelr_0.1.0 gridGraphics_0.2 pkgconfig_2.0.1
[34] BiocGenerics_0.22.0 mnormt_1.5-5 pkgbuild_0.0.0.9000
[37] gridExtra_2.2.1 showtextdb_1.0 crayon_1.3.2.9000
[40] withr_1.0.2 grid_3.4.1 nlme_3.1-131
[43] jsonlite_1.5 gtable_0.2.0 DBI_0.7
[46] magrittr_1.5 scales_0.4.1.9002 stringi_1.1.5
[49] reshape2_1.4.2 ggthemes_3.4.0 bindrcpp_0.2
[52] xml2_1.1.1 EBImage_4.18.0 tools_3.4.1
[55] showtext_0.4-6 glue_1.1.1 jpeg_0.1-8
[58] hms_0.3 abind_1.4-5 pkgload_0.0.0.9000
[61] parallel_3.4.1 colorspace_1.3-2 rvest_0.3.2
[64] ggimage_0.0.4 memoise_1.1.0 bindr_0.1
[67] haven_1.1.0
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the image-file example in the README and reproduce the crash using sticker() with the reported sessionInfo. Trace the failure from sticker() through ggsave() and grid drawing; done means the example completes without a segfault and writes imgfile.png.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data-visualization
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100