GLYCAM-Web / GLYCAM-Web/gmml

It's possible to build and get a minimized structure of DGlcpa1-1DGlcpa1-OH

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#164 0 comments 0 reactions 1 assignee Claimed by @gitoliver View on GitHub
bug
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C++
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Description

Gmml will accept the above string and build a structure for it. Amber will minimize it:
![image](https://github.com/GLYCAM-Web/gmml/assets/17079588/bfe9e43e-97f7-4c17-bc8d-c8c1a07bd6e9)
Gmml should instead detect that the structure isn't feasible throw an error. The residue codes protect us from this in other cases like this:
DGlcpa1-3[DGlcpa1-3]DGlcpa1-OH, where we get the error:
No linkage code found in GMML metadata for a carbohydrate residue with other residues attached at these positions: 3,3
But the anomeric position is treated differently.

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